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    CG11710 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 33044, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11710provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0031115
    Locus tag
    Dmel_CG11710
    See related
    AllianceGenome:FB:FBgn0031115
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11710
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be involved in positive regulation of DNA-templated transcription. Predicted to be part of RQC-trigger complex. Predicted to be active in nucleus. Is expressed in organism. Orthologous to human TRIP4 (thyroid hormone receptor interactor 4). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11710 in Genome Data Viewer
    Location:
    19D1-19D1; 1-64 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (20427411..20429673, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (20298438..20300700, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene cactin Neighboring gene uncharacterized protein Neighboring gene maroon-like Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in rescue of stalled ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RQC-trigger complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11710-PA
    CG11710-PB
    CG11710-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      20427411..20429673 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298563.1 → NP_001285492.1  uncharacterized protein Dmel_CG11710, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285492.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRA1
      Conserved Domains (2) summary
      cd06554
      Location:367 → 478
      ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...
      pfam06221
      Location:120 → 168
      zf-C2HC5; Putative zinc finger motif, C2HC5-type

    2. NM_167704.3 → NP_728344.1  uncharacterized protein Dmel_CG11710, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_728344.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T921
      Related
      FBpp0088586
      Conserved Domains (2) summary
      cd06554
      Location:367 → 423
      ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...
      pfam06221
      Location:120 → 168
      zf-C2HC5; Putative zinc finger motif, C2HC5-type

    3. NM_134549.4 → NP_608393.1  uncharacterized protein Dmel_CG11710, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_608393.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VRA1
      Related
      FBpp0088585
      Conserved Domains (2) summary
      cd06554
      Location:367 → 478
      ASCH_ASC-1_like; ASC-1 homology domain, ASC-1-like subfamily. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain ...
      pfam06221
      Location:120 → 168
      zf-C2HC5; Putative zinc finger motif, C2HC5-type
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8T921 Q8T921
    Q9VRA1 Q9VRA1

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