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    Csap1 common salivary protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 171161, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Csap1provided by RGD
    Official Full Name
    common salivary protein 1provided by RGD
    Primary source
    RGD:708577
    See related
    EnsemblRapid:ENSRNOG00000049151 AllianceGenome:RGD:708577
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    CSP1
    Summary
    Located in extracellular space. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Csap1 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (13414952..13420913)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12910368..12916336)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (13230181..13230577)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120095044 Neighboring gene developmental pluripotency associated 5 , pseudogene 1 Neighboring gene serine protease 21 Neighboring gene spermine binding protein Neighboring gene 40S ribosomal protein S25 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of common salivary protein 1, a product of rat submandibular, sublingual, and parotid glands. Girard LR, et al. J Biol Chem, 1993 Dec 15. PMID 8253789
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    common salivary protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133622.2 → NP_598306.2  common salivary protein 1 precursor

      See identical proteins and their annotated locations for NP_598306.2

      Status: VALIDATED

      Source sequence(s)
      BI284022, U00964
      UniProtKB/TrEMBL
      A6HCN7, M0R7K9, Q63015
      Conserved Domains (1) summary
      cd09611
      Location:29 → 157
      Jacalin_ZG16_like; Jacalin-like lectin domain of the zymogen granule protein 16 and related proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      13414952..13420913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039085154.2 → XP_038941082.1  common salivary protein 1 isoform X1

      UniProtKB/TrEMBL
      A6HCN7, M0R7K9, Q63015
      Related
      ENSRNOP00000065441.2, ENSRNOT00000075648.3
      Conserved Domains (1) summary
      cd09611
      Location:29 → 157
      Jacalin_ZG16_like; Jacalin-like lectin domain of the zymogen granule protein 16 and related proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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