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    Obp56h Odorant-binding protein 56h [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 37271, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Obp56hprovided by FlyBase
    Official Full Name
    Odorant-binding protein 56hprovided by FlyBase
    Primary source
    FLYBASE:FBgn0034475
    Locus tag
    Dmel_CG13874
    See related
    AllianceGenome:FB:FBgn0034475
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    56h; CG13874; DmelObp56h; Dmel\CG13874; OBP56h
    Summary
    Predicted to enable odorant binding activity. Involved in mating behavior; mating pheromone secretion; and sensory perception of smell. Predicted to be located in extracellular region. Is expressed in Bolwig organ; embryonic antennal sense organ; and larval labral sensory complex. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See Obp56h in Genome Data Viewer
    Location:
    56E4-56E4; 2-90 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (19815554..19816204)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (15703059..15703709)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45231 Neighboring gene transfer RNA:Lysine-CTT 1-11 Neighboring gene Toll-7 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pleiotropic fitness effects of a Drosophila odorant-binding protein. Mokashi SS, et al. G3 (Bethesda), 2023 Feb 9. PMID 36454098, Free PMC Article
    2. Obp56h Modulates Mating Behavior in Drosophila melanogaster. Shorter JR, et al. G3 (Bethesda), 2016 Oct 13. PMID 27558663, Free PMC Article
    3. The invertebrate odorant-binding protein LUSH is required for normal olfactory behavior in Drosophila. Kim MS, et al. Chem Senses, 2001 Feb. PMID 11238251
    4. Highly tissue specific expression of Sphinx supports its male courtship related role in Drosophila melanogaster. Chen Y, et al. PLoS One, 2011 Apr 26. PMID 21541324, Free PMC Article
    5. Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in the Drosophila Genus. Pal S, et al. J Comput Biol, 2023 Jan. PMID 36037023, Free PMC Article

    See all (44) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Pleiotropic fitness effects of a Drosophila odorant-binding protein.
      Title: Pleiotropic fitness effects of a Drosophila odorant-binding protein.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables odorant binding NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mating behavior IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in mating pheromone secretion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in olfactory behavior ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in response to pheromone ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in sensory perception of smell IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in extracellular region ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    Odorant-binding protein 56h
    Names
    CG13874-PA
    CG13874-PB
    Obp56h-PA
    Obp56h-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      19815554..19816204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_137604.2 → NP_611448.2  Odorant-binding protein 56h, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_611448.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0JQ25, A9QI73, A9QI74, A9QI75, A9QI82, A9QI83, A9QI84, A9QI85, A9QI89, A9QI90, A9QI92, A9QI95, A9QIA1, A9QIA2, A9QIB4, A9QIB8, A9QIB9, A9QIC1, Q4V3H6, Q9V8Y9
      UniProtKB/TrEMBL
      A0A0B4JD94
      Related
      FBpp0085637
      Conserved Domains (1) summary
      smart00708
      Location:26 → 128
      PhBP; Insect pheromone/odorant binding protein domains

    2. NM_001202050.1 → NP_001188979.1  Odorant-binding protein 56h, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001188979.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0JQ25, A9QI73, A9QI74, A9QI75, A9QI82, A9QI83, A9QI84, A9QI85, A9QI89, A9QI90, A9QI92, A9QI95, A9QIA1, A9QIA2, A9QIB4, A9QIB8, A9QIB9, A9QIC1, Q4V3H6, Q9V8Y9
      UniProtKB/TrEMBL
      A0A0B4JD94
      Conserved Domains (1) summary
      smart00708
      Location:26 → 128
      PhBP; Insect pheromone/odorant binding protein domains
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0B4JD94 A0A0B4JD94
    Q9V8Y9.2 Q9V8Y9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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