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    CG5273 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 31021, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG5273provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0040382
    Locus tag
    Dmel_CG5273
    See related
    AllianceGenome:FB:FBgn0040382
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5273; EG:BACR19J1.3
    Summary
    Involved in regulation of circadian rhythm. Is expressed in adult head. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG5273 in Genome Data Viewer
    Location:
    1C4-1C4; 1-0 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (759594..761939)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (653627..655972)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene sidekick Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene long non-coding RNA:CR44965 Neighboring gene long non-coding RNA:CR42491 Neighboring gene Ribosomal protein L22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A functional genomics strategy reveals clockwork orange as a transcriptional regulator in the Drosophila circadian clock. Matsumoto A, et al. Genes Dev, 2007 Jul 1. PMID 17578908, Free PMC Article
    2. Molecular evolution and population genetic analysis of candidate female reproductive genes in Drosophila. Panhuis TM, et al. Genetics, 2006 Aug. PMID 16783023, Free PMC Article
    3. Evidence that natural selection maintains genetic variation for sleep in Drosophila melanogaster. Svetec N, et al. BMC Evol Biol, 2015 Mar 13. PMID 25887180, Free PMC Article
    4. From first base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. Benos PV, et al. Genome Res, 2001 May. PMID 11337470, Free PMC Article
    5. GlycoFly: a database of Drosophila N-linked glycoproteins identified using SPEG--MS techniques. Baycin-Hizal D, et al. J Proteome Res, 2011 Jun 3. PMID 21480662

    See all (28) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in regulation of circadian rhythm IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5273-PA
    CG5273-PB
    CG5273-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      759594..761939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166862.4 → NP_726698.1  uncharacterized protein Dmel_CG5273, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726698.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSL8, Q0GSN2, Q9NF32, Q9W5D6
      Related
      FBpp0070132
      Conserved Domains (1) summary
      pfam16072
      Location:165 → 385
      DUF4813; Domain of unknown function (DUF4813)

    2. NM_130501.6 → NP_569857.1  uncharacterized protein Dmel_CG5273, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_569857.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSL8, Q0GSN2, Q9NF32, Q9W5D6
      Related
      FBpp0070130
      Conserved Domains (1) summary
      pfam16072
      Location:165 → 385
      DUF4813; Domain of unknown function (DUF4813)

    3. NM_166863.4 → NP_726699.1  uncharacterized protein Dmel_CG5273, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_726699.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0GSL8, Q0GSN2, Q9NF32, Q9W5D6
      Related
      FBpp0070131
      Conserved Domains (1) summary
      pfam16072
      Location:165 → 385
      DUF4813; Domain of unknown function (DUF4813)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9NF32 Q9NF32
    Q9W5D6 Q9W5D6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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