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    Gm13238 predicted gene 13238 [ Mus musculus (house mouse) ]

    Gene ID: 236069, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm13238provided by MGI
    Official Full Name
    predicted gene 13238provided by MGI
    Primary source
    MGI:MGI:3652104
    See related
    Ensembl:ENSMUSG00000096233 AllianceGenome:MGI:3652104
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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    Genomic context

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    See Gm13238 in Genome Data Viewer
    Location:
    4 E1; 4 78.26 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145563789..145564562)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145837219..145837992)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 15 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145371246-145371546 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145375889-145376189 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145380924-145381225 Neighboring gene tousled-like kinase 2 pseudogene Neighboring gene ZNF41, pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145411896-145412197 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145414700-145415001 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145418046-145418347 Neighboring gene STARR-seq mESC enhancer starr_12036 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145446019-145446319 Neighboring gene STARR-seq mESC enhancer starr_12037 Neighboring gene STARR-seq mESC enhancer starr_12038 Neighboring gene STARR-seq mESC enhancer starr_12039 Neighboring gene STARR-seq mESC enhancer starr_12040 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145479925-145480225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145482093-145482393 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145483669-145483970 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146017850-146018151 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • carnitine deficiency-associated gene expressed in ventricle 3 pseudogene
    • protein CDV3 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033612.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AL929465
      Related
      ENSMUST00000117655.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      145563789..145564562
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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