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    1700066M21Rik RIKEN cDNA 1700066M21 gene [ Mus musculus (house mouse) ]

    Gene ID: 73467, updated on 27-Nov-2024

    Summary

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    Official Symbol
    1700066M21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700066M21 geneprovided by MGI
    Primary source
    MGI:MGI:1920717
    See related
    Ensembl:ENSMUSG00000038323 AllianceGenome:MGI:1920717
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in mandible; maxilla; and orbito-sphenoid. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 53. Orthologous to human C2orf69 (chromosome 2 open reading frame 69). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in cortex adult (RPKM 4.1), CNS E18 (RPKM 3.9) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1700066M21Rik in Genome Data Viewer
    Location:
    1 C1.3; 1 28.78 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (57416755..57424587)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (57377596..57385428)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00978 Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene AmnSINE1 enhancer AS021 Neighboring gene STARR-seq mESC enhancer starr_00980 Neighboring gene RIKEN cDNA 4930558J18 gene Neighboring gene STARR-seq mESC enhancer starr_00984 Neighboring gene tRNA-yW synthesizing protein 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:57463249-57463358 Neighboring gene matrix AAA peptidase interacting protein 1 Neighboring gene predicted gene, 22371

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in oxidative phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in oxidative phosphorylation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    mitochondrial protein C2orf69 homolog
    Names
    UPF0565 protein C2orf69 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028546.1 → NP_082822.1  mitochondrial protein C2orf69 homolog precursor

      See identical proteins and their annotated locations for NP_082822.1

      Status: VALIDATED

      Source sequence(s)
      AC161493, CJ047538
      Consensus CDS
      CCDS48264.1
      UniProtKB/Swiss-Prot
      E9QNR4, Q9D9H8
      Related
      ENSMUSP00000040240.3, ENSMUST00000042734.3
      Conserved Domains (1) summary
      pfam10561
      Location:55 → 341
      UPF0565; uncharacterized protein family UPF0565

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      57416755..57424587
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243183.1 → XP_030099043.1  mitochondrial protein C2orf69 homolog isoform X1

      Conserved Domains (1) summary
      pfam10561
      Location:56 → 95
      UPF0565; Uncharacterized protein family UPF0565

    RNA

    1. XR_004934779.1 RNA Sequence

    2. XR_373264.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D9H8.3 GenPept UniProtKB/Swiss-Prot:Q9D9H8

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