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    4930426D05Rik RIKEN cDNA 4930426D05 gene [ Mus musculus (house mouse) ]

    Gene ID: 74644, updated on 27-Nov-2024

    Summary

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    Official Symbol
    4930426D05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930426D05 geneprovided by MGI
    Primary source
    MGI:MGI:1921894
    See related
    AllianceGenome:MGI:1921894
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in thyroid primordium. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in adrenal adult (RPKM 88.8), genital fat pad adult (RPKM 8.0) and 3 other tissues See more
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    Genomic context

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    See 4930426D05Rik in Genome Data Viewer
    Location:
    18 A2; 18 11.96 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (21784622..21789164)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (21651565..21656107)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_44013 Neighboring gene STARR-seq mESC enhancer starr_44015 Neighboring gene predicted gene, 22886 Neighboring gene STARR-seq mESC enhancer starr_44016 Neighboring gene predicted gene, 31646 Neighboring gene pyruvate kinase, muscle pseudogene Neighboring gene STARR-seq mESC enhancer starr_44017 Neighboring gene STARR-seq mESC enhancer starr_44018 Neighboring gene kelch-like 14 Neighboring gene STARR-seq mESC enhancer starr_44019 Neighboring gene coiled coil domain containing 178 Neighboring gene STARR-seq mESC enhancer starr_44020 Neighboring gene STARR-seq mESC enhancer starr_44021 Neighboring gene STARR-seq mESC enhancer starr_44023 Neighboring gene STARR-seq mESC enhancer starr_44024 Neighboring gene ribosomal protein SA pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Gene expression profiling at early organogenesis reveals both common and diverse mechanisms in foregut patterning. Fagman H, et al. Dev Biol, 2011 Nov 15. PMID 21924257, Free PMC Article
    2. A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome. Mural RJ, et al. Science, 2002 May 31. PMID 12040188
    3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC74644

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271580.1 → NP_001258509.1  uncharacterized protein LOC74644

      See identical proteins and their annotated locations for NP_001258509.1

      Status: VALIDATED

      Source sequence(s)
      AK015205, AW122173
      UniProtKB/TrEMBL
      Q9D5L2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      21784622..21789164
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250621.2 → XP_030106481.1  uncharacterized protein LOC74644 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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