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    Zmynd19 zinc finger, MYND-type containing 19 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 311791, updated on 9-Dec-2024

    Summary

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    Symbol
    Zmynd19provided by RGD
    Full Name
    zinc finger, MYND-type containing 19provided by RGD
    Primary source
    RGD:735079
    See related
    EnsemblRapid:ENSRNOG00000007752 AllianceGenome:RGD:735079
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    mizip
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm; membrane; and synapse. Orthologous to human ZMYND19 (zinc finger MYND-type containing 19). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 87.4), Thymus (RPKM 82.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmynd19 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28156314..28167903)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (7758133..7769722)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2158995..2168873)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene euchromatic histone lysine methyltransferase 1 Neighboring gene uncharacterized LOC134486057 Neighboring gene arrestin domain containing 1 Neighboring gene diphthamide biosynthesis 7 Neighboring gene mitochondrial ribosomal protein L41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Immunohistochemical distribution of MIZIP and its co-expression with the Melanin-concentrating hormone receptor 1 in the adult rodent brain. Francke F, et al. Brain Res Mol Brain Res, 2005 Sep 13. PMID 15950311
    2. MIZIP, a highly conserved, vertebrate specific melanin-concentrating hormone receptor 1 interacting zinc-finger protein. Bächner D, et al. FEBS Lett, 2002 Aug 28. PMID 12208518
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC108530

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in synapse ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger MYND domain-containing protein 19
    Names
    MCH-R1-interacting zinc finger protein
    melanin-concentrating hormone receptor 1 interacting zinc-finger protein
    zinc finger MYND domain-containing protein 19-like
    zinc finger, MYND domain containing 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198770.3 → NP_942065.1  zinc finger MYND domain-containing protein 19

      See identical proteins and their annotated locations for NP_942065.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/Swiss-Prot
      Q7TSV3
      UniProtKB/TrEMBL
      A0A8I6AB25, A6JSZ6
      Related
      ENSRNOP00000010270.5, ENSRNOT00000010270.9
      Conserved Domains (2) summary
      pfam01753
      Location:174 → 212
      zf-MYND; MYND finger
      cl00083
      Location:66 → 105
      HNHc; HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28156314..28167903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283922.1 → XP_063139992.1  zinc finger MYND domain-containing protein 19 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AB25

    2. XM_063283921.1 → XP_063139991.1  zinc finger MYND domain-containing protein 19 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AB25
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7TSV3.1 GenPept UniProtKB/Swiss-Prot:Q7TSV3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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