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    Znrd2 zinc ribbon domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689397, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Znrd2provided by RGD
    Official Full Name
    zinc ribbon domain containing 2provided by RGD
    Primary source
    RGD:1593467
    See related
    EnsemblRapid:ENSRNOG00000012736 AllianceGenome:RGD:1593467
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Sssca1
    Summary
    Predicted to enable identical protein binding activity. Orthologous to human ZNRD2 (zinc ribbon domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 85.6), Brain (RPKM 82.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Znrd2 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (212447010..212448793, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (203017682..203019465, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (221087803..221089586, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene EH domain binding protein 1-like 1 Neighboring gene potassium two pore domain channel subfamily K member 7 Neighboring gene family with sequence similarity 89, member B Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene SCY1 like pseudokinase 1 Neighboring gene uncharacterized LOC120097381 Neighboring gene nuclear paraspeckle assembly transcript 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein ZNRD2
    Names
    Sjoegren syndrome/scleroderma autoantigen 1
    Sjogren syndrome/scleroderma autoantigen 1 homolog
    Sjogren's syndrome/scleroderma autoantigen 1 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109537.2 → NP_001103007.1  protein ZNRD2

      See identical proteins and their annotated locations for NP_001103007.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6A6N4, A6HZ96, D3ZG88
      Related
      ENSRNOP00000017034.4, ENSRNOT00000017034.7
      Conserved Domains (2) summary
      pfam06677
      Location:37 → 74
      Auto_anti-p27; Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
      cl00210
      Location:2 → 95
      Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      212447010..212448793 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274608.1 → XP_063130678.1  protein ZNRD2 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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