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    Casp16 caspase 16 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680728, updated on 2-Nov-2024

    Summary

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    Symbol
    Casp16provided by RGD
    Full Name
    caspase 16provided by RGD
    Primary source
    RGD:1588238
    See related
    AllianceGenome:RGD:1588238
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Orthologous to human CASP16P (caspase 16, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 9.9), Lung (RPKM 2.2) and 7 other tissues See more
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    Genomic context

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    See Casp16 in Genome Data Viewer
    Location:
    10q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (13086467..13096658, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (12586009..12592023, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (12878933..12885492, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) 14 Neighboring gene ribosomal protein S2, pseudogene 17 Neighboring gene transfer RNA proline (anticodon UGG) 4 Neighboring gene transfer RNA lysine (anticodon CUU) 15 Neighboring gene transfer RNA arginine (anticodon CCU) 4 Neighboring gene transfer RNA arginine (anticodon CCG) 1 Neighboring gene zinc finger protein 213 Neighboring gene uncharacterized LOC120095040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein Casp16
    Names
    caspase 16, apoptosis-related cysteine peptidase (putative)
    caspase-14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      13086467..13096658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270080.1 → XP_063126150.1  uncharacterized protein Casp16 isoform X2

    2. XM_063270079.1 → XP_063126149.1  uncharacterized protein Casp16 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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