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    Rnf113a2 ring finger protein 113A2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 314313, updated on 27-Dec-2024

    Summary

    Official Symbol
    Rnf113a2provided by RGD
    Official Full Name
    ring finger protein 113A2provided by RGD
    Primary source
    RGD:1303128
    See related
    EnsemblRapid:ENSRNOG00000067995 AllianceGenome:RGD:1303128
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf183
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in snoRNA splicing. Predicted to be part of U2-type spliceosomal complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Rnf113a2 in Genome Data Viewer
    Location:
    6q31
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (109794794..109796075)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (104063677..104064958)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (108132254..108133535)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene FAM161 centrosomal protein B Neighboring gene coenzyme Q6 monooxygenase Neighboring gene ectonucleoside triphosphate diphosphohydrolase 5 Neighboring gene basal body orientation factor 1 Neighboring gene aldehyde dehydrogenase 6 family, member A1 Neighboring gene lin-52 DREAM MuvB core complex component

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in snoRNA splicing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    zinc finger protein 183 (RING finger, C3HC4 type)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004445.2NP_001004445.1  zinc finger protein 183 (RING finger, C3HC4 type)

      See identical proteins and their annotated locations for NP_001004445.1

      Status: VALIDATED

      Source sequence(s)
      BC100134
      UniProtKB/TrEMBL
      A0A8I5ZN54, Q67ER1
      Related
      ENSRNOP00000079294.1, ENSRNOT00000097822.2
      Conserved Domains (3) summary
      COG5152
      Location:57323
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      cd00162
      Location:261299
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam00642
      Location:197223
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      109794794..109796075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)