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    Syp Syncrip [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42460, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sypprovided by FlyBase
    Official Full Name
    Syncripprovided by FlyBase
    Primary source
    FLYBASE:FBgn0038826
    Locus tag
    Dmel_CG17838
    See related
    AllianceGenome:FB:FBgn0038826
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    AI945337; anon-WO0118547.613; cg17838; CG17838; Dmel\CG17838; l(3)03806; syp
    Summary
    Enables lncRNA binding activity; mRNA 3'-UTR binding activity; and mRNA 5'-UTR binding activity. Involved in several processes, including dorsal appendage formation; negative regulation of synaptic assembly at neuromuscular junction; and post-transcriptional regulation of gene expression. Located in several cellular components, including basal cortex; postsynapse of neuromuscular junction; and ribonucleoprotein granule. Part of precatalytic spliceosome. Is expressed in several structures, including adult head; adult heart; esophagus primordium; foregut primordium; and gonad. Orthologous to human HNRNPR (heterogeneous nuclear ribonucleoprotein R) and SYNCRIP (synaptotagmin binding cytoplasmic RNA interacting protein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Syp in Genome Data Viewer
    Location:
    92F12-93A1; 3-69 cM
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20756729..20810726)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16582451..16636448)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Proteasome alpha4 subunit, Testis-specific 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Tak1-like 1 Neighboring gene Fancd2 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables lncRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA 5'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in basal cortex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in postsynapse of neuromuscular junction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of precatalytic spliceosome HDA PubMed 
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in ribonucleoprotein granule IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    syncrip
    Names
    CG17838-PA
    CG17838-PB
    CG17838-PC
    CG17838-PD
    CG17838-PE
    CG17838-PF
    CG17838-PH
    CG17838-PI
    CG17838-PJ
    CG17838-PK
    CG17838-PL
    CG17838-PM
    CG17838-PN
    CG17838-PO
    CG17838-PP
    CG17838-PQ
    CG17838-PR
    CG17838-PS
    CG17838-PT
    CG17838-PV
    Syp-PA
    Syp-PB
    Syp-PC
    Syp-PD
    Syp-PE
    Syp-PF
    Syp-PH
    Syp-PI
    Syp-PJ
    Syp-PK
    Syp-PL
    Syp-PM
    Syp-PN
    Syp-PO
    Syp-PP
    Syp-PQ
    Syp-PR
    Syp-PS
    Syp-PT
    Syp-PV

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      20756729..20810726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275849.1NP_001262778.1  syncrip, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262778.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHH8, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:197275
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:278359
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:373444
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    2. NM_169927.3NP_732557.2  syncrip, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732557.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8IN47
      Related
      FBpp0083365
      Conserved Domains (3) summary
      cd12249
      Location:197275
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:278359
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:373444
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    3. NM_001104379.2NP_001097849.1  syncrip, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097849.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JR54
      Conserved Domains (3) summary
      cd12249
      Location:168246
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:249330
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:344415
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    4. NM_001369986.1NP_001356920.1  syncrip, isoform S [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4D6K4U6, Q86NT3
      Conserved Domains (1) summary
      TIGR01648
      Location:145547
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    5. NM_001369987.1NP_001356921.1  syncrip, isoform T [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4D6K1Z7
      Conserved Domains (1) summary
      TIGR01648
      Location:145547
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    6. NM_001275847.1NP_001262776.1  syncrip, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262776.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KH21
      Conserved Domains (3) summary
      cd12249
      Location:197275
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:278359
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:373444
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    7. NM_001275850.1NP_001262779.1  syncrip, isoform M [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262779.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KGK5, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:197275
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:278359
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:373444
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    8. NM_142656.4NP_650913.2  syncrip, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_650913.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JR56, Q7KSA0, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    9. NM_001275851.1NP_001262780.1  syncrip, isoform N [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262780.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KGF9, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    10. NM_001275855.1NP_001262784.1  syncrip, isoform R [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262784.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KGK8
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    11. NM_169928.3NP_732558.2  syncrip, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732558.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q7KSA1, Q95TW4
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    12. NM_169929.3NP_732559.1  syncrip, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732559.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A4V364
      Related
      FBpp0083368
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    13. NM_001104378.2NP_001097848.2  syncrip, isoform L [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001097848.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8JR56, Q7KSA0, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    14. NM_001275853.1NP_001262782.1  syncrip, isoform P [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262782.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KGF9, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:163241
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:244325
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:339410
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    15. NM_169925.3NP_732555.1  syncrip, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732555.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      C6SV30, Q8IN48
      Related
      FBpp0083370
      Conserved Domains (2) summary
      TIGR01648
      Location:153508
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
      cd21065
      Location:68150
      NURR_Syncrip-like; NURR (N-terminal unit for RNA recognition) domain found in Drosophila melanogaster Syncrip and similar proteins
    16. NM_001275854.1NP_001262783.1  syncrip, isoform Q [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262783.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHI4, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:205283
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:286367
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:381452
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    17. NM_001275848.1NP_001262777.1  syncrip, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262777.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KHT5, Q86NT3
      Conserved Domains (3) summary
      cd12249
      Location:205283
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:286367
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:381452
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    18. NM_169926.2NP_732556.1  syncrip, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_732556.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q86NT3, Q9VDI8
      Related
      FBpp0083369
      Conserved Domains (3) summary
      cd12249
      Location:205283
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:286367
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:381452
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
    19. NM_001369988.1NP_001356922.1  syncrip, isoform V [Drosophila melanogaster]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4D6K3P4
      Conserved Domains (1) summary
      TIGR01648
      Location:153555
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    20. NM_001275852.1NP_001262781.1  syncrip, isoform O [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262781.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0B4KH24
      Conserved Domains (3) summary
      cd12249
      Location:205283
      RRM1_hnRNPR_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12250
      Location:286367
      RRM2_hnRNPR_like; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins
      cd12251
      Location:381452
      RRM3_hnRNPR_like; RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins