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    Ccdc39 Coiled-coil domain containing protein 39 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 40595, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc39provided by FlyBase
    Official Full Name
    Coiled-coil domain containing protein 39provided by FlyBase
    Primary source
    FLYBASE:FBgn0037276
    Locus tag
    Dmel_CG17387
    See related
    AllianceGenome:FB:FBgn0037276
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG17387; Dmel\CG17387
    Summary
    Predicted to be involved in cilium-dependent cell motility; epithelial cilium movement involved in determination of left/right asymmetry; and inner dynein arm assembly. Predicted to be active in axoneme. Is expressed in adult head; chordotonal neurons; spermatogonium; and spermatozoon. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain 39 molecular ruler complex subunit). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See Ccdc39 in Genome Data Viewer
    Location:
    82D5-82D5; 3-47.1 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (4781120..4784722, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (606842..610444, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antimeros Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene circadian trip Neighboring gene Hus1-like Neighboring gene GDP-mannose pyrophosphorylase B Neighboring gene Bardet-Biedl syndrome 5

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    mobile_element

    • Loc: c4782166-4782069 mobile_element_type = transposon:INE-1{}5045

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in cilium movement IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cilium movement ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in cilium-dependent cell motility IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in epithelial cilium movement involved in determination of left/right asymmetry IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in inner dynein arm assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in inner dynein arm assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in axoneme IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in axoneme IEA
    Inferred from Electronic Annotation
    more info
     
    located_in axoneme ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    Coiled-coil domain containing protein 39
    Names
    CG17387-PA
    Ccdc39-PA

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      4781120..4784722 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_141238.2NP_649495.1  Coiled-coil domain containing protein 39 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_649495.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B3DMK5, Q9VN57
      Related
      FBpp0078520
      Conserved Domains (1) summary
      COG1196
      Location:200853
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]