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    hoka hoka [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 38588, updated on 9-Dec-2024

    Summary

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    Official Symbol
    hokaprovided by FlyBase
    Official Full Name
    hokaprovided by FlyBase
    Primary source
    FLYBASE:FBgn0035583
    Locus tag
    Dmel_CG13704
    See related
    AllianceGenome:FB:FBgn0035583
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    BcDNA:RE40159; CG13704; Dmel\CG13704
    Summary
    Enables structural molecule activity. Involved in smooth septate junction assembly. Located in apicolateral plasma membrane and smooth septate junction. Is expressed in several structures, including Malpighian tubule primordium; adult head; embryonic epipharynx; embryonic/larval midgut primordium; and gut section. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See hoka in Genome Data Viewer
    Location:
    64C2-64C2; 3-13 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (4898900..4900869)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (4898900..4900869)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene dynein, axonemal, heavy chain 3 Neighboring gene uncharacterized protein Neighboring gene Rh50 Neighboring gene long non-coding RNA:CR43627

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables structural molecule activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in smooth septate junction assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apicolateral plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in smooth septate junction IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hoka
    Names
    CG13704-PA
    hoka-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      4898900..4900869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_139682.1 → NP_647939.1  hoka [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_647939.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8SXS4, Q9VZ75
      Related
      FBpp0073209, FBtr0073353
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8SXS4 Q8SXS4

    Gene LinkOut

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