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    CG11085 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32213, updated on 9-Dec-2024

    Summary

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    Official Symbol
    CG11085provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030408
    Locus tag
    Dmel_CG11085
    See related
    AllianceGenome:FB:FBgn0030408
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG11085
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See CG11085 in Genome Data Viewer
    Location:
    11B4-11B4; 1-39 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (12616316..12621216)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (12510349..12515249)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR45621 Neighboring gene Folylpolyglutamate synthase 1 Neighboring gene long non-coding RNA:CR44568 Neighboring gene uncharacterized protein Neighboring gene Apoptosis and caspase activation inhibitor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Dynamic neurotransmitter specific transcription factor expression profiles during Drosophila development. Estacio-Gómez A, et al. Biol Open, 2020 Jun 3. PMID 32493733, Free PMC Article
    2. Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism. Blatti C, et al. Nucleic Acids Res, 2015 Apr 30. PMID 25791631, Free PMC Article
    3. Homeodomain proteins: an update. Bürglin TR, et al. Chromosoma, 2016 Jun. PMID 26464018, Free PMC Article
    4. Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP). Hoskins RA, et al. Nucleic Acids Res, 2005 Dec 2. PMID 16326860, Free PMC Article
    5. Conservation of transcription factor binding specificities across 600 million years of bilateria evolution. Nitta KR, et al. Elife, 2015 Mar 17. PMID 25779349, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in animal organ development IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG11085-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      12616316..12621216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_132587.4 → NP_572815.3  uncharacterized protein Dmel_CG11085 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_572815.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q4V6V5, Q9VYL0
      Conserved Domains (1) summary
      pfam00046
      Location:163 → 216
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VYL0 Q9VYL0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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