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    yata yata [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 43508, updated on 9-Dec-2024

    Summary

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    Official Symbol
    yataprovided by FlyBase
    Official Full Name
    yataprovided by FlyBase
    Primary source
    FLYBASE:FBgn0260990
    Locus tag
    Dmel_CG1973
    See related
    AllianceGenome:FB:FBgn0260990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG1973; Dmel\CG1973; Yata
    Summary
    Predicted to enable ATP binding activity. Is expressed in adult head. Used to study autosomal recessive spinocerebellar ataxia 21. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 21. Orthologous to human SCYL1 (SCY1 like pseudokinase 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See yata in Genome Data Viewer
    Location:
    99B10-99B10; 3-99 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (29749219..29754528)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (25574941..25580250)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene antisense RNA:CR46109 Neighboring gene ATP synthase, gamma subunit Neighboring gene Integrator 11 Neighboring gene long non-coding RNA:CR44953 Neighboring gene kayak Neighboring gene long non-coding RNA:CR46110

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of a cellular structure observed in the compound eyes of Drosophila white; yata mutants and white mutants. Arimoto E, et al. Biol Open, 2020 Jan 13. PMID 31862863, Free PMC Article
    2. Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis. Saito M, et al. Genes Genet Syst, 2021 Mar 23. PMID 33583916
    3. Drosophila embryonic 'fibroblasts': extending mutant analysis in vitro. Simcox AA, et al. Fly (Austin), 2008 Nov-Dec. PMID 19077546, Free PMC Article
    4. Suppression of the synaptic localization of a subset of proteins including APP partially ameliorates phenotypes of the Drosophila Alzheimer's disease model. Furotani K, et al. PLoS One, 2018. PMID 30226901, Free PMC Article
    5. Loss of yata, a novel gene regulating the subcellular localization of APPL, induces deterioration of neural tissues and lifespan shortening. Sone M, et al. PLoS One, 2009. PMID 19209226, Free PMC Article

    See all (47) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis.
      Title: Role of the Drosophila YATA protein in the proper subcellular localization of COPI revealed by in vivo analysis.
    2. yata mutants showed impaired subcellular localization of APPL.
      Title: Loss of yata, a novel gene regulating the subcellular localization of APPL, induces deterioration of neural tissues and lifespan shortening.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    NOT enables protein kinase activity IKR
    Inferred from Key Residues
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    yata
    Names
    CG1973-PA
    CG1973-PB
    yata-PA
    yata-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      29749219..29754528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001276153.1 → NP_001263082.1  yata, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001263082.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VAH7
      Conserved Domains (4) summary
      pfam00069
      Location:34 → 257
      Pkinase; Protein kinase domain
      pfam13300
      Location:838 → 859
      DUF4078; Domain of unknown function (DUF4078)
      sd00044
      Location:351 → 375
      HEAT; HEAT repeat [structural motif]
      cl21453
      Location:30 → 294
      PKc_like; Protein Kinases, catalytic domain

    2. NM_143465.2 → NP_651722.1  yata, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651722.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9VAH7
      Related
      FBpp0084843
      Conserved Domains (4) summary
      pfam00069
      Location:34 → 257
      Pkinase; Protein kinase domain
      pfam13300
      Location:838 → 859
      DUF4078; Domain of unknown function (DUF4078)
      sd00044
      Location:351 → 375
      HEAT; HEAT repeat [structural motif]
      cl21453
      Location:30 → 294
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VAH7 Q9VAH7

    Gene LinkOut

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