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    Ankrd48 ankyrin repeat domain 48 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305491, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ankrd48provided by RGD
    Official Full Name
    ankyrin repeat domain 48provided by RGD
    Primary source
    RGD:735187
    See related
    EnsemblRapid:ENSRNOG00000056767 AllianceGenome:RGD:735187
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Potea; Ankrd36; Spergen2; RGD1560273
    Summary
    Orthologous to human ANKRD36 (ankyrin repeat domain 36). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 87.8) See more
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    Genomic context

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    See Ankrd48 in Genome Data Viewer
    Location:
    14q21
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (84665671..84782434)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (80451699..80568458)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (85814809..85931577)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096650 Neighboring gene FSHD region gene 2 Neighboring gene small ribosomal subunit protein eS24-like Neighboring gene KAT8 regulatory NSL complex subunit 2, pseudogene 4 Neighboring gene ribosomal protein L18, pseudogene 8 Neighboring gene mitochondrial ribosomal protein S24 Neighboring gene upregulator of cell proliferation

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Complementary DNA cloning and characterization of rat spergen-2, a spermatogenic cell-specific gene 2 encoding a 56-kilodalton nuclear protein bearing ankyrin repeat motifs. Iida H, et al. Biol Reprod, 2003 Aug. PMID 12646494
    2. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. cloning and characterization; findings indicate a potential role of spergen-2 in spermatogenesis, especially in cell differentiation from late pachytene spermatocytes to spermatids or in early spermatid differentiation
      Title: Complementary DNA cloning and characterization of rat spergen-2, a spermatogenic cell-specific gene 2 encoding a 56-kilodalton nuclear protein bearing ankyrin repeat motifs.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94422, AC136588.3

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in spermatogenesis NAS
    Non-traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ankyrin repeat domain 36
    Names
    POTE ankyrin domain family, member A
    ankyrin repeat domain-containing protein 26
    ankyrin repeat domain-containing protein 36C
    spermatogenic cell-specific gene 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419749.1 → NP_001406678.1  ankyrin repeat domain 36 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      Related
      ENSRNOP00000073981.2, ENSRNOT00000090046.3

    2. NM_001419750.1 → NP_001406679.1  ankyrin repeat domain 36 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      84665671..84782434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008770392.4 → XP_008768614.1  ankyrin repeat domain 36 isoform X1

      See identical proteins and their annotated locations for XP_008768614.1

      Conserved Domains (4) summary
      cd00204
      Location:29 → 161
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:37 → 138
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:126 → 177
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:68 → 97
      ANK; ANK repeat [structural motif]

    2. XM_039092849.2 → XP_038948777.1  ankyrin repeat domain 36 isoform X3

      Conserved Domains (2) summary
      sd00045
      Location:99 → 130
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_063273222.1 → XP_063129292.1  ankyrin repeat domain 36 isoform X6

    4. XM_063273221.1 → XP_063129291.1  ankyrin repeat domain 36 isoform X5

    5. XM_039092850.2 → XP_038948778.1  ankyrin repeat domain 36 isoform X4

      Conserved Domains (2) summary
      sd00045
      Location:99 → 130
      ANK; ANK repeat [structural motif]
      cl39094
      Location:57 → 240
      Ank_2; Ankyrin repeats (3 copies)

    6. XM_039092848.2 → XP_038948776.1  ankyrin repeat domain 36 isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:1037 → 1314
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    7. XM_008770393.4 → XP_008768615.1  ankyrin repeat domain 36 isoform X2

      See identical proteins and their annotated locations for XP_008768615.1

      Conserved Domains (1) summary
      COG1196
      Location:1037 → 1314
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_005493389.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_198684.1: Suppressed sequence

      Description
      NM_198684.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from mouse, laboratory: Ankrd36 (GeneID:76389).
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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