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    C16h13orf46 similar to human chromosome 13 open reading frame 46 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 290876, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C16h13orf46provided by RGD
    Official Full Name
    similar to human chromosome 13 open reading frame 46provided by RGD
    Primary source
    RGD:1565445
    See related
    EnsemblRapid:ENSRNOG00000026740 AllianceGenome:RGD:1565445
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C13orf46 (chromosome 13 open reading frame 46). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 386.5) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C16h13orf46 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (82677041..82689807)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (75974501..75987629)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (81301810..81315504, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097558 Neighboring gene RAS p21 protein activator 3 Neighboring gene uncharacterized LOC134482420 Neighboring gene small ubiquitin-related modifier 2-like Neighboring gene transmembrane protein 255B Neighboring gene growth arrest specific 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Expression of a novel sphingosine 1-phosphate receptor motif protein gene in maturing rat testes. Khalid AM, et al. Biosci Biotechnol Biochem, 2012. PMID 22972346
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC116066

    General protein information

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    Preferred Names
    uncharacterized protein C13orf46 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037182.1 → NP_001032259.1  uncharacterized protein C13orf46 homolog

      See identical proteins and their annotated locations for NP_001032259.1

      Status: VALIDATED

      Source sequence(s)
      BC100249
      UniProtKB/TrEMBL
      A0A0U1RRS8, F7FH50, Q498E3
      Related
      ENSRNOP00000054615.2, ENSRNOT00000057803.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      82677041..82689807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006253433.5 → XP_006253495.1  uncharacterized protein C13orf46 homolog isoform X6

    2. XM_063275256.1 → XP_063131326.1  uncharacterized protein C13orf46 homolog isoform X7

    3. XM_017600043.3 → XP_017455532.1  uncharacterized protein C13orf46 homolog isoform X2

      UniProtKB/TrEMBL
      A0A0U1RRN7, A6IWG5

    4. XM_039094411.2 → XP_038950339.1  uncharacterized protein C13orf46 homolog isoform X5

      UniProtKB/TrEMBL
      A0A0U1RRN7, A6IWG5

    5. XM_063275255.1 → XP_063131325.1  uncharacterized protein C13orf46 homolog isoform X3

      UniProtKB/TrEMBL
      A0A0U1RRS8

    6. XM_006253432.5 → XP_006253494.1  uncharacterized protein C13orf46 homolog isoform X4

      UniProtKB/TrEMBL
      A0A0U1RRN7, A6IWG5
      Related
      ENSRNOP00000075751.2, ENSRNOT00000092361.3

    7. XM_006253430.5 → XP_006253492.1  uncharacterized protein C13orf46 homolog isoform X1

      UniProtKB/TrEMBL
      A0A0U1RRN7, A6IWG5

    8. XM_039094417.2 → XP_038950345.1  uncharacterized protein C13orf46 homolog isoform X8

    9. XM_039094415.2 → XP_038950343.1  uncharacterized protein C13orf46 homolog isoform X8

    10. XM_039094413.2 → XP_038950341.1  uncharacterized protein C13orf46 homolog isoform X8

    Nucleotide Protein Strain
    Heading Accession and Version

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