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    Zmat4 zinc finger, matrin type 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 684961, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zmat4provided by RGD
    Official Full Name
    zinc finger, matrin type 4provided by RGD
    Primary source
    RGD:1584398
    See related
    EnsemblRapid:ENSRNOG00000042690 AllianceGenome:RGD:1584398
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable identical protein binding activity. Predicted to be located in nucleus. Orthologous to human ZMAT4 (zinc finger matrin-type 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 64.5), Thymus (RPKM 21.1) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmat4 in Genome Data Viewer
    Location:
    16q12.5
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (74671975..75063805, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (67969410..68361377, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (72762558..73152921, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553995 Neighboring gene uncharacterized LOC134482410 Neighboring gene uncharacterized LOC120097517 Neighboring gene uncharacterized LOC134482523 Neighboring gene 40S ribosomal protein S8 pseudogene Neighboring gene uncharacterized LOC134482412 Neighboring gene uncharacterized LOC120097520 Neighboring gene uncharacterized LOC134482411

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC188207

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger matrin-type protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134747.1 → NP_001128219.1  zinc finger matrin-type protein 4

      See identical proteins and their annotated locations for NP_001128219.1

      Status: PROVISIONAL

      Source sequence(s)
      BC168220
      UniProtKB/TrEMBL
      A6IW38, B4F7C6, F1LU08
      Related
      ENSRNOP00000043474.5, ENSRNOT00000048602.6
      Conserved Domains (3) summary
      smart00451
      Location:142 → 176
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:147 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:15 → 38
      zf-met; Zinc-finger of C2H2 type

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      74671975..75063805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039094822.2 → XP_038950750.1  zinc finger matrin-type protein 4 isoform X1

      UniProtKB/TrEMBL
      A6IW38, B4F7C6, F1LU08
      Conserved Domains (3) summary
      smart00451
      Location:142 → 176
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:147 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:15 → 38
      zf-met; Zinc-finger of C2H2 type

    2. XM_039094823.2 → XP_038950751.1  zinc finger matrin-type protein 4 isoform X2

      Conserved Domains (3) summary
      smart00451
      Location:45 → 79
      ZnF_U1; U1-like zinc finger
      sd00020
      Location:50 → 72
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:101 → 125
      zf-met; Zinc-finger of C2H2 type
    Nucleotide Protein Strain
    Heading Accession and Version

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