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    Cinp cyclin-dependent kinase 2-interacting protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299334, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cinpprovided by RGD
    Official Full Name
    cyclin-dependent kinase 2-interacting proteinprovided by RGD
    Primary source
    RGD:1563395
    See related
    EnsemblRapid:ENSRNOG00000008035 AllianceGenome:RGD:1563395
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563395
    Summary
    Predicted to enable preribosome binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Orthologous to human CINP (cyclin dependent kinase 2 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 68.2), Adrenal (RPKM 65.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cinp in Genome Data Viewer
    Location:
    6q32
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (135698477..135720798, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (129878618..129899575, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (135290528..135304422, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene MOK protein kinase Neighboring gene uncharacterized LOC108351302 Neighboring gene transfer RNA isoleucine (anticodon AAU) 3 Neighboring gene zinc finger protein 839 Neighboring gene tectonin beta-propeller repeat containing 2 Neighboring gene uncharacterized LOC134479258 Neighboring gene ankyrin repeat domain 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables preribosome binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in ribosomal large subunit biogenesis ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    cyclin-dependent kinase 2-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106758.2 → NP_001100228.1  cyclin-dependent kinase 2-interacting protein

      See identical proteins and their annotated locations for NP_001100228.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158883
      UniProtKB/TrEMBL
      B0BNM8, F7F444
      Related
      ENSRNOP00000010598.6, ENSRNOT00000010598.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      135698477..135720798 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039112099.2 → XP_038968027.1  cyclin-dependent kinase 2-interacting protein isoform X5

      UniProtKB/TrEMBL
      A0A8I6ALT9

    2. XM_039112098.2 → XP_038968026.1  cyclin-dependent kinase 2-interacting protein isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZY53

    3. XM_039112097.2 → XP_038968025.1  cyclin-dependent kinase 2-interacting protein isoform X3

    4. XM_039112100.2 → XP_038968028.1  cyclin-dependent kinase 2-interacting protein isoform X6

      UniProtKB/TrEMBL
      A0A8I6ALT9, A6KBP0
      Related
      ENSRNOP00000096448.2, ENSRNOT00000111103.2

    5. XM_039112096.2 → XP_038968024.1  cyclin-dependent kinase 2-interacting protein isoform X2

      Related
      ENSRNOP00000084104.1, ENSRNOT00000099124.2

    6. XM_039112095.2 → XP_038968023.1  cyclin-dependent kinase 2-interacting protein isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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