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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCr8
Genomic
-
NC_086023.1 Reference GRCr8
- Range
-
154960818..155061971
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_039111301.2 → XP_038967229.1 basement membrane-specific heparan sulfate proteoglycan core protein isoform X1
- UniProtKB/TrEMBL
-
A0A8I6ASH2
- Conserved Domains (19) summary
-
- cd05743
Location:437 → 514
- Ig_Perlecan_like; Immunoglobulin (Ig)-like domain of the human basement membrane heparan sulfate proteoglycan perlecan and similar proteins
- smart00192
Location:301 → 332
- LDLa; Low-density lipoprotein receptor domain class A
- smart00408
Location:2802 → 2861
- IGc2; Immunoglobulin C-2 Type
- smart00281
Location:606 → 732
- LamB; Laminin B domain
- smart00409
Location:2602 → 2679
- IG; Immunoglobulin
- smart00410
Location:1841 → 1921
- IG_like; Immunoglobulin like
- cd00054
Location:4003 → 4036
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd00055
Location:1174 → 1223
- EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
- cd00110
Location:4089 → 4238
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
- cd00112
Location:384 → 419
- LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
- pfam00008
Location:4263 → 4293
- EGF; EGF-like domain
- pfam00052
Location:1006 → 1140
- Laminin_B; Laminin B (Domain IV)
- pfam00053
Location:1291 → 1338
- Laminin_EGF; Laminin EGF domain
- pfam07679
Location:3731 → 3813
- I-set; Immunoglobulin I-set domain
- pfam13927
Location:3367 → 3437
- Ig_3; Immunoglobulin domain
- cd00096
Location:3662 → 3722
- Ig; Immunoglobulin domain
- cd05754
Location:1929 → 2014
- IgI_Perlecan_like; Immunoglobulin (Ig)-like domain found in Perlecan and similar proteins; member of the I-set of Ig superfamily (IgSF) domains
- cl02507
Location:80 → 194
- SEA; SEA domain
- cl11960
Location:3560 → 3638
- Ig; Immunoglobulin domain
-
XM_063287775.1 → XP_063143845.1 basement membrane-specific heparan sulfate proteoglycan core protein isoform X3
- UniProtKB/TrEMBL
- A0A8I6A2S5, A0A8I6ASH2
- Related
- ENSRNOP00000086030.1, ENSRNOT00000098496.2
-
XM_063287774.1 → XP_063143844.1 basement membrane-specific heparan sulfate proteoglycan core protein isoform X2
- UniProtKB/TrEMBL
-
A0A8I6ASH2
-
XM_063287776.1 → XP_063143846.1 basement membrane-specific heparan sulfate proteoglycan core protein isoform X4
- UniProtKB/TrEMBL
-
A0A8I6ASH2