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    Rpl29 ribosomal protein L29 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 29283, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rpl29provided by RGD
    Official Full Name
    ribosomal protein L29provided by RGD
    Primary source
    RGD:62069
    See related
    EnsemblRapid:ENSRNOG00000011138 AllianceGenome:RGD:62069
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable heparin binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within cell-substrate adhesion; fibroblast proliferation; and translation. Located in ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 456.0), Spleen (RPKM 379.2) and 9 other tissues See more
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    Genomic context

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    See Rpl29 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (115056443..115949677)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (107068929..107070963)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (115131228..115133401)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene apurinic/apyrimidinic endodeoxyribonuclease 2, pseudogene 1 Neighboring gene ATPase secretory pathway Ca2+ transporting 1 Neighboring gene asteroid homolog 1 Neighboring gene ribosomal protein L29, pseudogene 14 Neighboring gene 5S ribosomal RNA Neighboring gene phosphoinositide-3-kinase, regulatory subunit 4 Neighboring gene collagen type VI alpha 6 chain Neighboring gene uncharacterized LOC103693167 Neighboring gene transfer RNA leucine (anticodon AAG) 7 Neighboring gene collagen type VI alpha 5 chain Neighboring gene collagen, type VI, alpha 4 Neighboring gene ribosomal protein L6, pseudogene 10 Neighboring gene microRNA let-7g Neighboring gene glycerate kinase Neighboring gene WD repeat domain 82 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent, 1M Neighboring gene uncharacterized LOC120094254 Neighboring gene twinfilin actin-binding protein 2 Neighboring gene 5'-aminolevulinate synthase 1 Neighboring gene toll-like receptor 9 Neighboring gene POC1 centriolar protein A Neighboring gene uncharacterized LOC134480228 Neighboring gene dual specificity phosphatase 7 Neighboring gene abhydrolase domain containing 14A Neighboring gene aminoacylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. p23, a novel mammalian nucleic acid-binding protein with homology to the yeast ribosomal protein YL43. Ostvold AC, et al. FEBS Lett, 1992 Feb 24. PMID 1544448
    2. Purification, primary structure and molecular cloning of a rat ribosomal protein showing homology with yeast ribosomal protein YL34. Svoboda M, et al. Eur J Biochem, 1992 Feb 1. PMID 1735422
    3. The primary structure of rat ribosomal protein L29. Chan YL, et al. Biochem Biophys Res Commun, 1993 Apr 30. PMID 8484767
    4. Gene expression profiling suggests a pathological role of human bone marrow-derived mesenchymal stem cells in aging-related skeletal diseases. Jiang SS, et al. Aging (Albany NY), 2011 Jul. PMID 21808097, Free PMC Article
    5. Post-translational processing of rat ribosomal proteins. Ubiquitous methylation of Lys22 within the zinc-finger motif of RL40 (carboxy-terminal extension protein 52) and tissue-specific methylation of Lys4 in RL29. Williamson NA, et al. Eur J Biochem, 1997 Jun 15. PMID 9219540

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables heparin binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell-substrate adhesion ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within fibroblast proliferation ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within multicellular organism growth ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within translation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytoplasmic side of rough endoplasmic reticulum membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytosolic ribosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of large ribosomal subunit ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in synapse ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    large ribosomal subunit protein eL29
    Names
    60S ribosomal protein L29
    P23

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_017150.1 → NP_058846.1  large ribosomal subunit protein eL29

      See identical proteins and their annotated locations for NP_058846.1

      Status: PROVISIONAL

      Source sequence(s)
      X68283
      UniProtKB/Swiss-Prot
      P25886
      UniProtKB/TrEMBL
      A6I2R0, M0R6U8
      Conserved Domains (1) summary
      pfam01779
      Location:4 → 42
      Ribosomal_L29e; Ribosomal L29e protein family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      115056443..115949677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063265012.1 → XP_063121082.1  large ribosomal subunit protein eL29 isoform X1

      UniProtKB/Swiss-Prot
      P25886
      UniProtKB/TrEMBL
      A6I2R0, M0R6U8

    2. XM_063265014.1 → XP_063121084.1  large ribosomal subunit protein eL29 isoform X1

      UniProtKB/Swiss-Prot
      P25886
      UniProtKB/TrEMBL
      A6I2R0, M0R6U8

    3. XM_063265010.1 → XP_063121080.1  large ribosomal subunit protein eL29 isoform X1

      UniProtKB/Swiss-Prot
      P25886
      UniProtKB/TrEMBL
      A6I2R0, M0R6U8

    4. XM_063265011.1 → XP_063121081.1  large ribosomal subunit protein eL29 isoform X1

      UniProtKB/Swiss-Prot
      P25886
      UniProtKB/TrEMBL
      A6I2R0, M0R6U8
      Related
      ENSRNOP00000100353.1, ENSRNOT00000158949.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P25886.3 GenPept UniProtKB/Swiss-Prot:P25886

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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