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    uspD universal stress protein D [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948415, updated on 3-Dec-2024

    Summary

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    Official Symbol
    uspD
    Official Full Name
    universal stress protein D
    Primary source
    ECOCYC:EG11877
    Locus tag
    b3923
    See related
    ASAP:ABE-0012816
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3915; yiiT
    Summary
    UspC, UspD, and UspE play nonredundant and probably sequential roles in a pathway involved in resistance to UV irradiation . [More information is available at EcoCyc: EG11877].
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    Genomic context

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    Sequence:
    NC_000913.3 (4113293..4113721)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF805 domain-containing protein YiiR Neighboring gene DUF406 domain-containing protein YiiS Neighboring gene flavodoxin/ferredoxin-NADP(+) reductase Neighboring gene fructose-1,6-bisphosphatase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vitro identification of Rns-regulated genes. Munson GP, et al. J Bacteriol, 2002 Feb. PMID 11807082, Free PMC Article
    2. Identification and characterization of the Escherichia coli stress protein UP12, a putative in vivo substrate of GroEL. Bochkareva ES, et al. Eur J Biochem, 2002 Jun. PMID 12071968
    3. Heterodimer formation within universal stress protein classes revealed by an in silico and experimental approach. Nachin L, et al. J Mol Biol, 2008 Jul 4. PMID 18514734
    4. Differential roles of the universal stress proteins of Escherichia coli in oxidative stress resistance, adhesion, and motility. Nachin L, et al. J Bacteriol, 2005 Sep. PMID 16159758, Free PMC Article
    5. Universal stress proteins in Escherichia coli. Siegele DA. J Bacteriol, 2005 Sep. PMID 16159755, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to UV IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to starvation IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in response to stress IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within response to superoxide IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    universal stress protein D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4113293..4113721
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418358.1 universal stress protein D [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418358.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A485JM32, A0A8S7CPE4
      Conserved Domains (1) summary
      PRK09982
      Location:1 → 142
      PRK09982; universal stress protein UspD; Provisional
    Nucleotide Protein
    Heading Accession and Version

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