U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    pdeI putative c-di-GMP phosphodiesterase PdeI [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945462, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    pdeI
    Official Full Name
    putative c-di-GMP phosphodiesterase PdeI
    Primary source
    ECOCYC:G6433
    Locus tag
    b0833
    See related
    ASAP:ABE-0002839
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0823; yliE
    Summary
    YliE has a C-terminal cyclic-di-GMP phosphodiesterase EAL domain. [More information is available at EcoGene: EG13476].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (872979..875327)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutathione ABC transporter membrane subunit GsiC Neighboring gene glutathione ABC transporter membrane subunit GsiD Neighboring gene putative diguanylate cyclase DgcI Neighboring gene ribosomal protein S12 methylthiotransferase RimO

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Uncovering the gene knockout landscape for improved lycopene production in E. coli. Alper H, et al. Appl Microbiol Biotechnol, 2008 Apr. PMID 18239914
    2. Second messenger signalling governs Escherichia coli biofilm induction upon ribosomal stress. Boehm A, et al. Mol Microbiol, 2009 Jun. PMID 19460094
    3. Expression and Genetic Activation of Cyclic Di-GMP-Specific Phosphodiesterases in Escherichia coli. Reinders A, et al. J Bacteriol, 2016 Feb 1. PMID 26553851, Free PMC Article
    4. The RNA binding protein CsrA controls cyclic di-GMP metabolism by directly regulating the expression of GGDEF proteins. Jonas K, et al. Mol Microbiol, 2008 Oct. PMID 18713317, Free PMC Article
    5. Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli. Sommerfeldt N, et al. Microbiology (Reading), 2009 Apr. PMID 19332833

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables cyclic-guanylate-specific phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cyclic-guanylate-specific phosphodiesterase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative c-di-GMP phosphodiesterase PdeI

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      872979..875327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415354.1 putative c-di-GMP phosphodiesterase PdeI [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415354.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAI9GU65
      Conserved Domains (2) summary
      smart00052
      Location:532 → 770
      EAL; Putative diguanylate phosphodiesterase
      pfam17153
      Location:35 → 150
      CHASE9; Periplasmic sensor domain, extracellular
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.