U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nohD putative DNA-packaging protein NohD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945172, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    nohD
    Official Full Name
    putative DNA-packaging protein NohD
    Primary source
    ECOCYC:EG11635
    Locus tag
    b0560
    See related
    ASAP:ABE-0001915
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0552; nohB
    Summary
    Most of NohD(NohB) is nearly identical to Nu1, but the last 9 aa of Nu1 are missing from NohD(NohB), which could be an allelic variation or a product of the deletion that presumably removed the adjacent large subunit protein A gene homolog. [More information is available at EcoGene: EG11635]. NohB is a homolog of the phage Nu1 DNA-packaging protein and is near a site of targeted chromosome cleavage by terminase . [More information is available at EcoCyc: EG11635].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (580834..581379)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein YbcW Neighboring gene DUF3950 domain-containing protein YlcI Neighboring gene pseudo Neighboring gene putative tail fiber assembly protein TfaD Neighboring gene pseudo

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification of sequences necessary for packaging DNA into lambda phage heads. Miwa T, et al. Gene, 1982 Dec. PMID 6299893
    2. Lambda phage DNA sequences affecting the packaging process. Miwa T, et al. Gene, 1983 Oct. PMID 6227527
    3. Site-specific dissection of E. coli chromosome by lambda terminase. Kotani H, et al. Nucleic Acids Res, 1992 Jul 11. PMID 1630906, Free PMC Article
    4. Multiple stressor-induced proteome responses of Escherichia coli BL21(DE3). Han KY, et al. J Proteome Res, 2008 May. PMID 18363324
    5. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative DNA-packaging protein NohD

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      580834..581379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415092.1 putative DNA-packaging protein NohD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415092.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAN3KQ21
      Conserved Domains (1) summary
      pfam07471
      Location:1 → 164
      Phage_Nu1; Phage DNA packaging protein Nu1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.