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    yphB putative aldose 1-epimerase YphB [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947017, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yphB
    Official Full Name
    putative aldose 1-epimerase YphB
    Primary source
    ECOCYC:G7338
    Locus tag
    b2544
    See related
    ASAP:ABE-0008368
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2541
    Summary
    galM, yphB and yihR are paralogs. [More information is available at EcoGene: EG13463].
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    Genomic context

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    Sequence:
    NC_000913.3 (2673816..2674688, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative 3-phenylpropionate/cinnamate dioxygenase ferredoxin reductase subunit Neighboring gene putative inner membrane protein Neighboring gene putative zinc-binding dehydrogenase YphC Neighboring gene putative ABC transporter membrane subunit YphD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovery and characterization of a sulfoquinovose mutarotase using kinetic analysis at equilibrium by exchange spectroscopy. Abayakoon P, et al. Biochem J, 2018 Apr 16. PMID 29535276, Free PMC Article
    2. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables aldose 1-epimerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables racemase and epimerase activity, acting on carbohydrates and derivatives RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in galactose catabolic process via UDP-galactose IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glucose metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative aldose 1-epimerase YphB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2673816..2674688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417039.1 putative aldose 1-epimerase YphB [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417039.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4TWC6, A0A376FY34, A0A8S7B801
      Conserved Domains (1) summary
      cd09021
      Location:11 → 286
      Aldose_epim_Ec_YphB; aldose 1-epimerase, similar to Escherichia coli YphB
    Nucleotide Protein
    Heading Accession and Version

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