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    Rapgef3os2 Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 2 [ Mus musculus (house mouse) ]

    Gene ID: 102636367, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Rapgef3os2provided by MGI
    Official Full Name
    Rap guanine nucleotide exchange factor (GEF) 3, opposite strand 2provided by MGI
    Primary source
    MGI:MGI:3826581
    See related
    AllianceGenome:MGI:3826581
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm16256
    Expression
    Broad expression in kidney adult (RPKM 1.6), genital fat pad adult (RPKM 1.5) and 24 other tissues See more
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    Genomic context

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    See Rapgef3os2 in Genome Data Viewer
    Location:
    15 53.76 cM; 15 F1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (97659587..97666718)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (97761578..97768837)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7415 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:97551732-97551973 Neighboring gene endonuclease, polyU-specific Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:97561501-97561858 Neighboring gene STARR-positive B cell enhancer ABC_E5512 Neighboring gene STARR-positive B cell enhancer ABC_E2450 Neighboring gene Rap guanine nucleotide exchange factor (GEF) 3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:97580414-97580523 Neighboring gene predicted gene, 33531 Neighboring gene STARR-seq mESC enhancer starr_39638 Neighboring gene STARR-positive B cell enhancer ABC_E5513 Neighboring gene predicted gene, 46535 Neighboring gene solute carrier family 48 (heme transporter), member 1 Neighboring gene histone deacetylase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Clone Names

    • AC104225.4

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      97659587..97666718
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003951459.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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