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    ydhJ putative membrane fusion protein YdhJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946499, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydhJ
    Official Full Name
    putative membrane fusion protein YdhJ
    Primary source
    ECOCYC:G6884
    Locus tag
    b1644
    See related
    ASAP:ABE-0005501
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1640
    Summary
    YdhJ has a putative signal anchor. [More information is available at EcoGene: EG13944].
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    Genomic context

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    Sequence:
    NC_000913.3 (1721264..1722121)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator SlyA Neighboring gene DUF1656 domain-containing protein YdhI Neighboring gene putative transporter YdhK Neighboring gene superoxide dismutase (Cu-Zn)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Systematic characterization of Escherichia coli genes/ORFs affecting biofilm formation. Tenorio E, et al. FEMS Microbiol Lett, 2003 Aug 8. PMID 12900028
    2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    3. A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map. Aiba H, et al. DNA Res, 1996 Dec 31. PMID 9097039
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to toxic substance IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative membrane fusion protein YdhJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1721264..1722121
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416161.4 putative membrane fusion protein YdhJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416161.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A1X3I6Y9, A0A1X3JFT1
      Conserved Domains (1) summary
      COG1566
      Location:4 → 283
      EmrA; Multidrug resistance efflux pump [Defense mechanisms]
    Nucleotide Protein
    Heading Accession and Version

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