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    ybiX PKHD-type hydroxylase YbiX [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947502, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybiX
    Official Full Name
    PKHD-type hydroxylase YbiX
    Primary source
    ECOCYC:G6413
    Locus tag
    b0804
    See related
    ASAP:ABE-0002746
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0793
    Summary
    YbiX is related to PiuC, an iron-regulated P. aeruginosa protein. [More information is available at EcoGene: EG13316].
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    Genomic context

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    Sequence:
    NC_000913.3 (838530..839207, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF1471 domain-containing protein YbiJ Neighboring gene zinc finger domain-containing protein YbiI Neighboring gene iron catecholate outer membrane transporter Fiu Neighboring gene DUF1471 domain-containing protein McbA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of FUR regulons in gamma-proteobacteria. Panina EM, et al. Nucleic Acids Res, 2001 Dec 15. PMID 11812853, Free PMC Article
    2. Global iron-dependent gene regulation in Escherichia coli. A new mechanism for iron homeostasis. McHugh JP, et al. J Biol Chem, 2003 Aug 8. PMID 12746439
    3. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    4. Over 1000 genes are involved in the DNA damage response of Escherichia coli. Khil PP, et al. Mol Microbiol, 2002 Apr. PMID 11967071
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 2-oxoglutarate-dependent dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA damage response IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in intracellular iron ion homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within intracellular iron ion homeostasis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PKHD-type hydroxylase YbiX

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      838530..839207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415325.4 PKHD-type hydroxylase YbiX [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415325.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0K5J8P5, A0A2X1QD63, A0A376JTT0, A0A3S5DW55, A0AAQ1Q0F5, W1WZ83
      Conserved Domains (1) summary
      PRK05467
      Location:1 → 225
      PRK05467; Fe(II)-dependent oxygenase superfamily protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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