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    slc35c1 solute carrier family 35 member C1 [ Danio rerio (zebrafish) ]

    Gene ID: 494047, updated on 4-Jan-2025

    Summary

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    Official Symbol
    slc35c1provided by ZNC
    Official Full Name
    solute carrier family 35 member C1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041212-11
    See related
    Ensembl:ENSDARG00000104669 AllianceGenome:ZFIN:ZDB-GENE-041212-11
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc03b12; wu:fc03b12; zgc:101867
    Summary
    Predicted to be located in membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIc. Orthologous to human SLC35C1 (solute carrier family 35 member C1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See slc35c1 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (72271452..72277342, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (72023379..72028051, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene signal-induced proliferation-associated 1 Neighboring gene RAS guanyl-releasing protein 2 Neighboring gene intestinal mucin-like protein Neighboring gene toll interacting protein Neighboring gene mucin-2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Direct Visualization of Live Zebrafish Glycans via Single-Step Metabolic Labeling with Fluorophore-Tagged Nucleotide Sugars. Hong S, et al. Angew Chem Int Ed Engl, 2019 Oct 1. PMID 31295389, Free PMC Article
    2. Metabolic labeling of fucosylated glycans in developing zebrafish. Dehnert KW, et al. ACS Chem Biol, 2011 Jun 17. PMID 21425872, Free PMC Article
    3. Negative feedback regulation of Wnt signaling via N-linked fucosylation in zebrafish. Feng L, et al. Dev Biol, 2014 Nov 15. PMID 25238963, Free PMC Article
    4. Effects of hypothermia on gene expression in zebrafish gills: upregulation in differentiation and function of ionocytes as compensatory responses. Chou MY, et al. J Exp Biol, 2008 Oct. PMID 18805806
    5. Expression and regulation of drug transporters in vertebrate neutrophils. Foulkes MJ, et al. Sci Rep, 2017 Jul 10. PMID 28694436, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    GDP-fucose transporter 1
    Names
    GFT
    solute carrier family 35 (GDP-fucose transporter), member C1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008590.1 → NP_001008590.1  GDP-fucose transporter 1

      See identical proteins and their annotated locations for NP_001008590.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086750
      UniProtKB/TrEMBL
      A0A2R8QCY6, B2GP05, Q5PR94
      Related
      ENSDARP00000149581.1, ENSDART00000183927.1
      Conserved Domains (1) summary
      TIGR00817
      Location:29 → 322
      tpt; Tpt phosphate/phosphoenolpyruvate translocator

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      72271452..72277342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005169053.5 → XP_005169110.1  GDP-fucose transporter 1 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BH03
      Conserved Domains (1) summary
      TIGR00817
      Location:42 → 335
      tpt; Tpt phosphate/phosphoenolpyruvate translocator
    Nucleotide Protein Strain
    Heading Accession and Version

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