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    sarnp SAP domain containing ribonucleoprotein [ Danio rerio (zebrafish) ]

    Gene ID: 554106, updated on 9-Dec-2024

    Summary

    Official Symbol
    sarnpprovided by ZNC
    Official Full Name
    SAP domain containing ribonucleoproteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-161
    See related
    Ensembl:ENSDARG00000059357 AllianceGenome:ZFIN:ZDB-GENE-050522-161
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb11c11; zgc:109957
    Summary
    Predicted to be involved in poly(A)+ mRNA export from nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in nucleus. Orthologous to human SARNP (SAP domain containing ribonucleoprotein). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See sarnp in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 11 NC_007122.7 (3309229..3318877)
    105 previous assembly GRCz10 (GCF_000002035.5) 11 NC_007122.6 (3241069..3250717)

    Chromosome 11 - NC_007122.7Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 19 Neighboring gene cyclin dependent kinase 2 Neighboring gene peripherin Neighboring gene tubulin, alpha 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in nucleus  
    part_of ribonucleoprotein complex  

    General protein information

    Preferred Names
    SAP domain-containing ribonucleoprotein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024407.2 → NP_001019578.1  SAP domain-containing ribonucleoprotein

      See identical proteins and their annotated locations for NP_001019578.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095082
      UniProtKB/TrEMBL
      Q504C3
      Related
      ENSDARP00000076893.3, ENSDART00000082458.6
      Conserved Domains (1) summary
      pfam02037
      Location:7 → 41
      SAP; SAP domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007122.7 Reference GRCz11 Primary Assembly

      Range
      3309229..3318877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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