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    ubtd2 ubiquitin domain containing 2 [ Danio rerio (zebrafish) ]

    Gene ID: 436991, updated on 4-Jan-2025

    Summary

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    Official Symbol
    ubtd2provided by ZNC
    Official Full Name
    ubiquitin domain containing 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040718-473
    See related
    Ensembl:ENSDARG00000069184 AllianceGenome:ZFIN:ZDB-GENE-040718-473
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:91797
    Summary
    Predicted to be located in cytoplasm. Orthologous to human UBTD2 (ubiquitin domain containing 2). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See ubtd2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (35215830..35281616)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (35181340..35247126)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488837 Neighboring gene uncharacterized LOC137488838 Neighboring gene interleukin 12B, b Neighboring gene ubiquitin-like domain containing CTD phosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Delta-sarcoglycan is required for early zebrafish muscle organization. Guyon JR, et al. Exp Cell Res, 2005 Mar 10. PMID 15707578
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002718.2 → NP_001002718.2  ubiquitin domain-containing protein 2

      Status: VALIDATED

      Source sequence(s)
      BC076510, EH608257
      UniProtKB/Swiss-Prot
      Q6DG43
      UniProtKB/TrEMBL
      F1QPG5
      Related
      ENSDARP00000117284.1, ENSDART00000135256.2
      Conserved Domains (3) summary
      smart00213
      Location:157 → 227
      UBQ; Ubiquitin homologues
      pfam16455
      Location:32 → 136
      UBD; Ubiquitin-binding domain
      cl00155
      Location:158 → 227
      UBQ; Ubiquitin-like proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      35215830..35281616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395096.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      199399..263419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6DG43.1 GenPept UniProtKB/Swiss-Prot:Q6DG43

    Gene LinkOut

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