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    wu:fc17b08 wu:fc17b08 [ Danio rerio (zebrafish) ]

    Gene ID: 556205, updated on 27-Dec-2024

    Summary

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    Official Symbol
    wu:fc17b08provided by ZNC
    Official Full Name
    wu:fc17b08provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2746
    See related
    AllianceGenome:ZFIN:ZDB-GENE-030131-2746
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc17b08
    Orthologs
    all
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    Genomic context

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    See wu:fc17b08 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (534450..550494)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (404145..420299)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene delta(4)-desaturase, sphingolipid 1 Neighboring gene nuclear VCP like Neighboring gene slit homolog 1a (Drosophila) Neighboring gene tumor protein p53 binding protein, 2a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    serine-rich adhesin for platelets; uncharacterized protein wu:fc17b08; wu:fc17b08

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      534450..550494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_678958.10 → XP_684050.6  serine-rich adhesin for platelets isoform X1

      UniProtKB/TrEMBL
      A0A8N7UUM9
      Conserved Domains (1) summary
      pfam15090
      Location:1257 → 1668
      DUF4553; Domain of unknown function (DUF4553)

    2. XM_021480700.2 → XP_021336375.1  uncharacterized protein wu:fc17b08 isoform X2

      UniProtKB/TrEMBL
      A0A8M9QNK6
      Conserved Domains (2) summary
      pfam15090
      Location:1108 → 1525
      DUF4553; Domain of unknown function (DUF4553)
      cl25496
      Location:790 → 1047
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein
    Heading Accession and Version

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