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    • Showing Current items.

    si:ch211-107p11.3 si:ch211-107p11.3 [ Danio rerio (zebrafish) ]

    Gene ID: 564100, updated on 9-Dec-2024

    Summary

    Official Symbol
    si:ch211-107p11.3provided by ZNC
    Official Full Name
    si:ch211-107p11.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-3607
    See related
    Ensembl:ENSDARG00000103000 AllianceGenome:ZFIN:ZDB-GENE-030131-3607
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc46g06; wu:fc46g06
    Summary
    Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See si:ch211-107p11.3 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (26841143..26844064, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (26569880..26572897, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene CD82 molecule a Neighboring gene tetraspanin 18a Neighboring gene uncharacterized LOC137496170 Neighboring gene exostosin glycosyltransferase 2 Neighboring gene ALX homeobox 4a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    GT1 domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386565.1NP_001373494.1  GT1 domain-containing protein

      Status: VALIDATED

      Source sequence(s)
      BX510305
      UniProtKB/TrEMBL
      A0A0R4IGR7, A0A8N7T7V2
      Related
      ENSDARP00000132822.1, ENSDART00000162241.2
      Conserved Domains (1) summary
      cl23759
      Location:584
      GT1; myb-like, SANT family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      26841143..26844064 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)