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    cxl34c CX chemokine ligand 34c [ Danio rerio (zebrafish) ]

    Gene ID: 336400, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cxl34cprovided by ZNC
    Official Full Name
    CX chemokine ligand 34cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8344
    See related
    Ensembl:ENSDARG00000096664 AllianceGenome:ZFIN:ZDB-GENE-030131-8344
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb09d09; si:ch211-125g7.3
    Summary
    Predicted to enable CCR chemokine receptor binding activity and chemokine activity. Predicted to be involved in several processes, including antimicrobial humoral immune response mediated by antimicrobial peptide; cell chemotaxis; and chemokine-mediated signaling pathway. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cxl34c in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (13152517..13155653, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene coiled-coil serine-rich protein 2b Neighboring gene PAT1 homolog 2 Neighboring gene calymmin Neighboring gene progestin and adipoQ receptor family member IVb Neighboring gene pelota mRNA surveillance and ribosome rescue factor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_007123.7 Chromosome 12 Reference GRCz11 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive expansion and diversification of the chemokine gene family in zebrafish: identification of a novel chemokine subfamily CX. Nomiyama H, et al. BMC Genomics, 2008 May 15. PMID 18482437, Free PMC Article
    2. Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history. Nomiyama H, et al. Genes Cells, 2013 Jan. PMID 23145839, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    General protein information

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    Preferred Names
    CX chemokine ligand 34c
    Names
    CXL-chr12a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423235.1 → NP_001410164.1  CX chemokine ligand 34c precursor

      Status: VALIDATED

      Source sequence(s)
      CT954256
      Related
      ENSDARP00000126667.1, ENSDART00000152467.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      13152517..13155653 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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