mrpl39 mitochondrial ribosomal protein L39 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: mrpl39provided by ZNC
Official Full Name: mitochondrial ribosomal protein L39provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-6520
See related: Ensembl:ENSDARG00000041570 AllianceGenome:ZFIN:ZDB-GENE-030131-6520
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fa13h09; zgc:63888; wu:fa13h09
Summary: Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (580671..591334)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (585492..596155)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

z1986 (e-PCR), detects polymorphism
- UniSTS:205167

fa13h09.s1 (e-PCR)
- UniSTS:202370

G44818 (e-PCR)
- UniSTS:105620

G40145 (e-PCR)
- UniSTS:34724

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: large ribosomal subunit protein mL39

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199915.3 → NP_956209.1 large ribosomal subunit protein mL39

See identical proteins and their annotated locations for NP_956209.1

Status: VALIDATED

Source sequence(s)

EH459982, EH506373, EH565271, EH605445

UniProtKB/TrEMBL

A4QN57, F6PEE2, Q7T3F9

Related

ENSDARP00000119574.1, ENSDART00000147633.2

Conserved Domains (1) summary

cd01667
Location:66 → 120

TGS_ThrRS_N; TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and ...