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    tax1bp1a Tax1 (human T-cell leukemia virus type I) binding protein 1a [ Danio rerio (zebrafish) ]

    Gene ID: 561219, updated on 4-Jan-2025

    Summary

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    Official Symbol
    tax1bp1aprovided by ZNC
    Official Full Name
    Tax1 (human T-cell leukemia virus type I) binding protein 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-587
    See related
    Ensembl:ENSDARG00000098288 AllianceGenome:ZFIN:ZDB-GENE-060503-587
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-204j16.2
    Summary
    Predicted to enable metal ion binding activity. Predicted to act upstream of or within apoptotic process. Orthologous to human TAX1BP1 (Tax1 binding protein 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See tax1bp1a in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (19549062..19599372, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (19976176..20026420, complement)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 5a Neighboring gene JAZF zinc finger 1a Neighboring gene 3-hydroxyisobutyrate dehydrogenase a Neighboring gene homeobox A13a Neighboring gene even-skipped homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Tri-phasic expression of posterior Hox genes during development of pectoral fins in zebrafish: implications for the evolution of vertebrate paired appendages. Ahn D, et al. Dev Biol, 2008 Oct 1. PMID 18638469
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tax1-binding protein 1 homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346178.1 → NP_001333107.1  tax1-binding protein 1 homolog A

      Status: VALIDATED

      Source sequence(s)
      BX601646
      UniProtKB/Swiss-Prot
      Q1LWB0
      UniProtKB/TrEMBL
      A0A2C9F1R8, A0A8M1PAL1
      Related
      ENSDARP00000133043.2, ENSDART00000160002.3

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      19549062..19599372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215155.1 → XP_068071256.1  tax1-binding protein 1 homolog A isoform X2

      UniProtKB/Swiss-Prot
      Q1LWB0

    2. XM_068215154.1 → XP_068071255.1  tax1-binding protein 1 homolog A isoform X1

      UniProtKB/Swiss-Prot
      Q1LWB0
      UniProtKB/TrEMBL
      A0A2C9F1R8, A0A8M1PAL1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1LWB0.2 GenPept UniProtKB/Swiss-Prot:Q1LWB0

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