spata18 spermatogenesis associated 18 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spata18provided by ZNC
Official Full Name: spermatogenesis associated 18provided by ZNC
Primary source: ZFIN:ZDB-GENE-050522-306
See related: Ensembl:ENSDARG00000052343 AllianceGenome:ZFIN:ZDB-GENE-050522-306
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:7140046; zgc:110352
Summary: Acts upstream of or within response to steroid hormone. Predicted to be located in cytoplasm. Predicted to be active in mitochondrial outer membrane. Is expressed in floor plate; ovary; peripheral olfactory organ; pronephric duct; and spinal cord. Orthologous to human SPATA18 (spermatogenesis associated 18). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (23160676..23171209, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (23261576..23272107, complement)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in DNA damage response	ISS Inferred from Sequence or Structural Similarity more info
involved_in mitochondrial protein catabolic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within mitochondrial protein catabolic process	IEA Inferred from Electronic Annotation more info
involved_in mitochondrial protein catabolic process	ISS Inferred from Sequence or Structural Similarity more info
involved_in mitophagy by internal vacuole formation	IBA Inferred from Biological aspect of Ancestor more info
involved_in mitophagy by internal vacuole formation	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within response to steroid hormone	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrial outer membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrial outer membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial outer membrane	ISS Inferred from Sequence or Structural Similarity more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: mitochondria-eating protein

Names: Spetex-1; spermatogenesis-associated protein 18 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.