zgc:113232 zgc:113232 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:113232provided by ZNC
Official Full Name: zgc:113232provided by ZNC
Primary source: ZFIN:ZDB-GENE-050327-86
See related: Ensembl:ENSDARG00000040118 AllianceGenome:ZFIN:ZDB-GENE-050327-86
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Predicted to be active in basement membrane and extracellular space. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

Location:: chromosome: 16

Exon count:: 25

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (38360006..38389883)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (38409974..38439851)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent conferring tensile strength	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in extracellular matrix organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in basement membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: uncharacterized protein LOC541546

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001014359.1 → NP_001014381.1 uncharacterized protein LOC541546 isoform 1 precursor

See identical proteins and their annotated locations for NP_001014381.1

Status: PREDICTED

Source sequence(s)

BC091810

UniProtKB/TrEMBL

B2GST6, Q58EP8

Related

ENSDARP00000081780.3, ENSDART00000087346.5

Conserved Domains (1) summary

pfam01391
Location:342 → 399

Collagen; Collagen triple helix repeat (20 copies)
NM_001127513.1 → NP_001120985.1 uncharacterized protein LOC541546 isoform 2 precursor

Status: PREDICTED

Source sequence(s)

AL929190

UniProtKB/TrEMBL

A0A8M1NH17, A8DZD1

Related

ENSDARP00000116602.1, ENSDART00000148101.3

Conserved Domains (1) summary

pfam01391
Location:324 → 381

Collagen; Collagen triple helix repeat (20 copies)