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    atrnl1b attractin-like 1b [ Danio rerio (zebrafish) ]

    Gene ID: 569196, updated on 9-Dec-2024

    Summary

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    Official Symbol
    atrnl1bprovided by ZNC
    Official Full Name
    attractin-like 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8092
    See related
    Ensembl:ENSDARG00000006420 AllianceGenome:ZFIN:ZDB-GENE-030131-8092
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    atrnl1; fj51h04; wu:fj51h04
    Summary
    Predicted to enable Notch binding activity. Predicted to be located in membrane. Orthologous to human ATRNL1 (attractin like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See atrnl1b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (29842966..30032165, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (29728090..29917261, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene neuregulin 3b Neighboring gene uncharacterized LOC137496862 Neighboring gene gdnf family receptor alpha 1b Neighboring gene actin binding LIM protein 1b Neighboring gene TruB pseudouridine (psi) synthase family member 1 Neighboring gene uncharacterized LOC108191726

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. tdrd1 is a germline-specific and sexually dimorphically expressed gene in Paralichthys olivaceus. Zhao J, et al. Gene, 2018 Oct 5. PMID 29920365
    2. Gdnf Acts as a Germ Cell-Derived Growth Factor and Regulates the Zebrafish Germ Stem Cell Niche in Autocrine- and Paracrine-Dependent Manners. Doretto LB, et al. Cells, 2022 Apr 11. PMID 35455974, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables Notch binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    attractin-like protein 1
    Names
    attractin-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      29842966..30032165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_692563.10 → XP_697655.4  attractin-like protein 1

      UniProtKB/TrEMBL
      A0A8N7UTF5, E7F6C7
      Related
      ENSDARP00000042513.7, ENSDART00000042514.10
      Conserved Domains (9) summary
      cd03597
      Location:730 → 858
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:74 → 189
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:997 → 1042
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:449 → 498
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:873 → 922
      PSI; Plexin repeat
      pfam13415
      Location:298 → 344
      Kelch_3; Galactose oxidase, central domain
      pfam13418
      Location:449 → 495
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:333 → 373
      Kelch_5; Kelch motif
      cl19567
      Location:211 → 261
      DSL; Delta serrate ligand
    Nucleotide Protein Strain
    Heading Accession and Version

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