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    cuedc1b CUE domain containing 1b [ Danio rerio (zebrafish) ]

    Gene ID: 556847, updated on 4-Jan-2025

    Summary

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    Official Symbol
    cuedc1bprovided by ZNC
    Official Full Name
    CUE domain containing 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070424-29
    See related
    Ensembl:ENSDARG00000054748 AllianceGenome:ZFIN:ZDB-GENE-070424-29
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:162271
    Summary
    Predicted to enable ubiquitin binding activity. Orthologous to human CUEDC1 (CUE domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    all
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    Genomic context

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    See cuedc1b in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (31182744..31237370, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (31306836..31356644, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene kinase suppressor of ras 1b Neighboring gene WD repeat and SOCS box containing 1 Neighboring gene vascular endothelial zinc finger 1b Neighboring gene gap junction delta-2 protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Galectins in channel catfish, Ictalurus punctatus: Characterization and expression profiling in mucosal tissues. Zhou S, et al. Fish Shellfish Immunol, 2016 Feb. PMID 26767746
    2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    CUE domain-containing protein 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089373.1 → NP_001082842.1  CUE domain-containing protein 1b

      See identical proteins and their annotated locations for NP_001082842.1

      Status: PROVISIONAL

      Source sequence(s)
      BC133928
      UniProtKB/TrEMBL
      A3KNN4
      Related
      ENSDARP00000151431.1, ENSDART00000182009.1
      Conserved Domains (1) summary
      cd14366
      Location:38 → 79
      CUE_CUED1; CUE domain found in CUE domain-containing protein 1 (CUED1) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      31182744..31237370 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068213557.1 → XP_068069658.1  CUE domain-containing protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M2B3Y1, F1QA38

    2. XM_068213558.1 → XP_068069659.1  CUE domain-containing protein 1b isoform X1

      UniProtKB/TrEMBL
      A0A8M2B3Y1, F1QA38
    Nucleotide Protein Strain
    Heading Accession and Version

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