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    ccdc85a coiled-coil domain containing 85A [ Danio rerio (zebrafish) ]

    Gene ID: 100141348, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ccdc85aprovided by ZNC
    Official Full Name
    coiled-coil domain containing 85Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080220-55
    See related
    Ensembl:ENSDARG00000039497 AllianceGenome:ZFIN:ZDB-GENE-080220-55
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:175167
    Summary
    Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See ccdc85a in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (26998006..27038407, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (26869944..26907965, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene si:rp71-1h3.1 Neighboring gene FA complementation group L Neighboring gene VRK serine/threonine kinase 2 Neighboring gene heme-binding protein soul2 Neighboring gene solute carrier family 24 member 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 85A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001320191.1 → NP_001307120.1  coiled-coil domain-containing protein 85A

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the protein.
      Source sequence(s)
      BX571979, EH432792, EH460229
      UniProtKB/TrEMBL
      A0A8M1P897, B8A5P4
      Related
      ENSDARP00000116404.1, ENSDART00000146712.2
      Conserved Domains (2) summary
      pfam10226
      Location:21 → 205
      DUF2216; Uncharacterized conserved proteins (DUF2216)
      cl19308
      Location:295 → 342
      MdoG; Periplasmic glucan biosynthesis protein, MdoG

    RNA

    1. NR_135163.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      BC155335, BX571979, EH432792, EH460229
      Related
      ENSDART00000057710.6

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      26998006..27038407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307276.4 → XP_009305551.1  coiled-coil domain-containing protein 85A isoform X1

      UniProtKB/TrEMBL
      A0A8M3BEL9
      Conserved Domains (2) summary
      pfam10226
      Location:21 → 205
      DUF2216; Uncharacterized conserved proteins (DUF2216)
      cl19308
      Location:295 → 342
      MdoG; Periplasmic glucan biosynthesis protein, MdoG

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001114913.1: Suppressed sequence

      Description
      NM_001114913.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
    Nucleotide Protein Strain
    Heading Accession and Version

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