U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    smim14 small integral membrane protein 14 [ Danio rerio (zebrafish) ]

    Gene ID: 402894, updated on 9-Dec-2024

    Summary

    Official Symbol
    smim14provided by ZNC
    Official Full Name
    small integral membrane protein 14provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-22
    See related
    Ensembl:ENSDARG00000005799 AllianceGenome:ZFIN:ZDB-GENE-040426-22
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:77713
    Summary
    Predicted to be located in membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SMIM14 (small integral membrane protein 14). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See smim14 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (23297623..23308233, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (22606884..22617494, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene lipoic acid synthetase Neighboring gene UDP-glucose 6-dehydrogenase Neighboring gene ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) Neighboring gene PDS5 cohesin associated factor A

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    small integral membrane protein 14

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205602.2NP_991165.1  small integral membrane protein 14

      See identical proteins and their annotated locations for NP_991165.1

      Status: PROVISIONAL

      Source sequence(s)
      BC068038
      UniProtKB/TrEMBL
      A0A2R8QEE4, F6P3J1, Q6NVI5
      Related
      ENSDARP00000022551.7, ENSDART00000008201.9
      Conserved Domains (1) summary
      pfam11027
      Location:3100
      DUF2615; Protein of unknown function (DUF2615)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      23297623..23308233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394481.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      33093..43703 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)