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    SHT spermidine hydroxycinnamoyl transferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816424, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SHT
    Official Full Name
    spermidine hydroxycinnamoyl transferase
    Primary source
    TAIR:AT2G19070
    Locus tag
    AT2G19070
    See related
    Araport:AT2G19070
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    spermidine hydroxycinnamoyl transferase; T20K24.8; T20K24_8
    Summary
    encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)
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    Genomic context

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    See SHT in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (8260038..8261985, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RALF-like 13 Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene metaxin-like protein Neighboring gene DUF630 family protein (DUF630 and DUF632) Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines. Grienenberger E, et al. Plant J, 2009 Apr. PMID 19077165
    2. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, et al. Plant Physiol, 2011 Oct. PMID 21849515, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SHT is specifically expressed in anther tapetum cells in the early stages of flower development, and involved in the synthesis of hydroxycinnamoyl spermidines.
      Title: A BAHD acyltransferase is expressed in the tapetum of Arabidopsis anthers and is involved in the synthesis of hydroxycinnamoyl spermidines.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    NM_127464.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables N-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables hydroxycinnamoyltransferase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables spermidine:caffeoyl CoA N-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables spermidine:coumaroyl CoA N-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables spermidine:feruloyl CoA N-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables spermidine:sinapoyl CoA N-acyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within spermidine hydroxycinnamate conjugate biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    spermidine hydroxycinnamoyl transferase
    NP_179497.1
    • spermidine hydroxycinnamoyl transferase (SHT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (TAIR:AT5G48930.1); Has 2876 Blast hits to 2852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 2754; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8260038..8261985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127464.2 → NP_179497.1  spermidine hydroxycinnamoyl transferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179497.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64470
      UniProtKB/TrEMBL
      A0A178VR29, A0A5S9WZC3, A0A7G2ED77
      Conserved Domains (1) summary
      PLN03157
      Location:2 → 451
      PLN03157; spermidine hydroxycinnamoyl transferase; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64470.1

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