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    calmodulin-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817159, updated on 18-Sep-2024

    Summary

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    Official Full Name
    calmodulin-binding family protein
    Primary source
    TAIR:AT2G26190
    Locus tag
    AT2G26190
    See related
    Araport:AT2G26190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T1D16.17; T1D16_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (11147581..11150754, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box SKIP23-like protein (DUF295) Neighboring gene cytochrome P450, family 711, subfamily A, polypeptide 1 Neighboring gene IQ-domain 6 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene Ankyrin repeat family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis IQM4, a Novel Calmodulin-Binding Protein, Is Involved With Seed Dormancy and Germination in Arabidopsis. Zhou YP, et al. Front Plant Sci, 2018. PMID 29951071, Free PMC Article
    2. The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling. Choi H, et al. Physiol Plant, 2014 Feb. PMID 23964902
    3. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336041.1
    NM_128177.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables calmodulin binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    acts_upstream_of_or_within response to abscisic acid IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to salt stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    calmodulin-binding family protein
    NP_565618.1
    • calmodulin-binding family protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT4G33050.3); Has 368 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 105; Plants - 232; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11147581..11150754 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336040.1 → NP_001324666.1  calmodulin-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B0V5

    2. NM_128177.3 → NP_565618.1  calmodulin-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565618.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64851
      UniProtKB/TrEMBL
      A0A178VU23, A0A7G2EF39

    3. NM_001336041.1 → NP_001324665.1  calmodulin-binding family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64851
      UniProtKB/TrEMBL
      A0A178VU23, A0A7G2EF39
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64851.1

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