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    WLIM2a GATA type zinc finger transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818577, updated on 18-Sep-2024

    Summary

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    Official Symbol
    WLIM2a
    Official Full Name
    GATA type zinc finger transcription factor family protein
    Primary source
    TAIR:AT2G39900
    Locus tag
    AT2G39900
    See related
    Araport:AT2G39900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.6; T28M21_6
    Summary
    Encodes a member of the Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns. WLIM1, WLIM2a, and WLIM2b are widely expressed, whereas PLIM2a, PLIM2b, and PLIM2c are predominantly expressed in pollen. Regulates actin cytoskeleton organization.
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    Genomic context

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    See WLIM2a in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (16658468..16660443)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene proline transporter 1 Neighboring gene ARM repeat superfamily protein Neighboring gene HAD superfamily, subfamily IIIB acid phosphatase Neighboring gene isoamylase 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis LIM proteins: a family of actin bundlers with distinct expression patterns and modes of regulation. Papuga J, et al. Plant Cell, 2010 Sep. PMID 20817848, Free PMC Article
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129548.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables actin filament binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament bundle assembly IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    colocalizes_with actin cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GATA type zinc finger transcription factor family protein
    NP_181519.1
    • GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT3G55770.5); Has 4468 Blast hits to 3092 proteins in 184 species: Archae - 0; Bacteria - 0; Metazoa - 3526; Fungi - 76; Plants - 531; Viruses - 0; Other Eukaryotes - 335 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16658468..16660443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129548.4 → NP_181519.1  GATA type zinc finger transcription factor family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181519.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04193
      UniProtKB/TrEMBL
      A0A178VU35, A0A5S9X5J6
      Conserved Domains (2) summary
      cd09440
      Location:6 → 68
      LIM1_SF3; The first Lim domain of pollen specific protein SF3
      cd09441
      Location:109 → 169
      LIM2_SF3; The second Lim domain of pollen specific protein SF3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04193.1

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