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    RNA polymerase I specific transcription initiation factor RRN3 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818040, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA polymerase I specific transcription initiation factor RRN3 protein
    Primary source
    TAIR:AT2G34750
    Locus tag
    AT2G34750
    See related
    Araport:AT2G34750
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T29F13.4; T29F13_4
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    16
    Sequence:
    Chromosome: 2; NC_003071.7 (14660217..14664404, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclear factor Y, subunit A4 Neighboring gene myosin heavy chain-like protein Neighboring gene protein phosphatase 2C family protein Neighboring gene miscRNA Neighboring gene fatty acid hydroxylase 1 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_179905.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA polymerase I general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription initiation at RNA polymerase I promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase I specific transcription initiation factor RRN3 protein
    NP_850236.1
    • RNA polymerase I specific transcription initiation factor RRN3 protein; FUNCTIONS IN: RNA polymerase I transcription factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase I specific transcription initiation factor RRN3 (InterPro:IPR007991); BEST Arabidopsis thaliana protein match is: RNA polymerase I specific transcription initiation factor RRN3 protein (TAIR:AT1G30590.1); Has 368 Blast hits to 356 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 124; Fungi - 131; Plants - 69; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14660217..14664404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179905.4 → NP_850236.1  RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850236.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VT28, A0A5S9X3Z0, A0A654EYW2, Q8L643
      Conserved Domains (1) summary
      pfam05327
      Location:23 → 542
      RRN3; RNA polymerase I specific transcription initiation factor RRN3
    Nucleotide Protein
    Heading Accession and Version

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