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    SET domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816400, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SET domain-containing protein
    Primary source
    TAIR:AT2G18850
    Locus tag
    AT2G18850
    See related
    Araport:AT2G18850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MSF3.23; MSF3_23
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (8160600..8163762)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene RNA-binding (RRM/RBD/RNP motif) family protein Neighboring gene Integral membrane Yip1 family protein Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene vernalization5/VIN3-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202622.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SET domain-containing protein
    NP_001189551.1
    • SET domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1).
    NP_179475.3
    • SET domain-containing protein; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 858 Blast hits to 854 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 224; Fungi - 205; Plants - 298; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8160600..8163762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127441.4 → NP_179475.3  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179475.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTC8, A0A5S9WZ44, Q5PNU0, Q84WA8
      Conserved Domains (1) summary
      cd10527
      Location:165 → 395
      SET_LSMT; SET domain found in Rubisco large subunit methyltransferase (LSMT) and similar proteins

    2. NM_001202622.1 → NP_001189551.1  SET domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189551.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZ44, F4IRH2, Q84WA8
    Nucleotide Protein
    Heading Accession and Version

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