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    Ribosomal L28e protein family [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816492, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribosomal L28e protein family
    Primary source
    TAIR:AT2G19730
    Locus tag
    AT2G19730
    See related
    Araport:AT2G19730
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F6F22.24; F6F22_24
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (8511486..8513291)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Regulator of Vps4 activity in the MVB pathway protein Neighboring gene ribosomal protein S15A B Neighboring gene Ribosomal protein L31e family protein Neighboring gene Ribosomal protein S30 family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ribosomal proteins promote leaf adaxial identity. Yao Y, et al. Development, 2008 Apr. PMID 18305007
    2. The Arabidopsis metacaspase9 degradome. Tsiatsiani L, et al. Plant Cell, 2013 Aug. PMID 23964026, Free PMC Article
    3. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
    4. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    5. High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. Giavalisco P, et al. Plant Mol Biol, 2005 Mar. PMID 15821981

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036297.2
    NM_001084451.1
    NM_127531.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adaxial/abaxial pattern specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in leaf morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in mitochondrion HDA PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal L28e protein family
    NP_001031374.1
    • Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077920.1
    • Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, chloroplast, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2); Has 531 Blast hits to 531 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
    NP_179563.1
    • Ribosomal L28e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28e (InterPro:IPR002672); BEST Arabidopsis thaliana protein match is: Ribosomal L28e protein family (TAIR:AT4G29410.2); Has 531 Blast hits to 531 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 280; Fungi - 94; Plants - 107; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8511486..8513291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036297.2 → NP_001031374.1  Ribosomal L28e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031374.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82204
      UniProtKB/TrEMBL
      A0A178VXA5, A0A5S9WZF3
      Conserved Domains (1) summary
      pfam01778
      Location:8 → 125
      Ribosomal_L28e; Ribosomal L28e protein family

    2. NM_127531.4 → NP_179563.1  Ribosomal L28e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179563.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82204
      UniProtKB/TrEMBL
      A0A178VXA5, A0A5S9WZF3
      Conserved Domains (1) summary
      pfam01778
      Location:8 → 125
      Ribosomal_L28e; Ribosomal L28e protein family

    3. NM_001084451.1 → NP_001077920.1  Ribosomal L28e protein family [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077920.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O82204
      UniProtKB/TrEMBL
      A0A178VXA5, A0A5S9WZF3
      Conserved Domains (1) summary
      pfam01778
      Location:8 → 125
      Ribosomal_L28e; Ribosomal L28e protein family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O82204.1

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