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    NCRK Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817371, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NCRK
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT2G28250
    Locus tag
    AT2G28250
    See related
    Araport:AT2G28250
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T3B23.8; T3B23_8
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    Genomic context

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    See NCRK in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (12042348..12046616)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene TATA-binding related factor (TRF) of subunit 20 of Mediator complex Neighboring gene ATP-dependent helicase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cyclic nucleotide-gated channel 15 Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A cysteine-rich receptor-like kinase NCRK and a pathogen-induced protein kinase RBK1 are Rop GTPase interactors. Molendijk AJ, et al. Plant J, 2008 Mar. PMID 18088316
    2. An integrative approach to the identification of Arabidopsis and rice genes involved in xylan and secondary wall development. Oikawa A, et al. PLoS One, 2010 Nov 23. PMID 21124849, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036358.2
    NM_001336154.1
    NM_001336155.1
    NM_001336156.1
    NM_179784.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTPase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within xylem development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in endosome membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_001031435.1
    • NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_850115.1
    • NCRK; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G10620.1); Has 107841 Blast hits to 106732 proteins in 3090 species: Archae - 127; Bacteria - 12810; Metazoa - 39123; Fungi - 9020; Plants - 31343; Viruses - 335; Other Eukaryotes - 15083 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12042348..12046616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336153.1 → NP_001323735.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. NM_001036358.2 → NP_001031435.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031435.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. NM_001336154.1 → NP_001323736.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    4. NM_179784.2 → NP_850115.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850115.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    5. NM_001336155.1 → NP_001323737.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    6. NM_001336156.1 → NP_001323738.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q0WWT1, Q8VYY5, Q9SL30
      UniProtKB/TrEMBL
      A0A178VW29, A0A5S9X272, A0A7G2E9M3
      Conserved Domains (1) summary
      cd14066
      Location:216 → 492
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYY5.1

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